Can Keşmir: search on Z-Library

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1

The evolution of natural killer cell receptors

Carrillo-Bustamante, Paola, Keşmir, Can, de Boer, Rob J.

Journal:

Year:

2016

Language:

english

File:

PDF, 541 KB

english, 2016

2

Exploratory Study of Predicted Indirectly ReCognizable HLA Epitopes in Mismatched Hematopoietic Cell Transplantations

Geneugelijk, Kirsten, Thus, Kirsten A., van Deutekom, Hanneke W. M., Calis, Jorg J. A., Borst, Eric, Keşmir, Can, Oudshoorn, Machteld, van der Holt, Bronno, Meijer, Ellen, Zeerleder, Sacha, de Groot,

Journal:

Frontiers in Immunology

Year:

2019

Language:

english

File:

PDF, 723 KB

english, 2019

3

From image processing to classification: II. Classification of electrophoretic patterns using self-organizing feature maps and feed-forward neural networks

Can Keşmir, Dr. Ib Søndergaard, Kirsten Jensen

Journal:

ELECTROPHORESIS

Year:

1995

Language:

english

File:

PDF, 654 KB

english, 1995

4

From image processing to classification: IV. Classification of electrophoretic patterns by neural networks and statistical methods enable quality assessment of wheat varieties for breadmaking

Kristen Jensen, Can Kesmir, Dr. Ib Søndergaard

Journal:

ELECTROPHORESIS

Year:

1996

Language:

english

File:

PDF, 562 KB

english, 1996

5

Complex T-Cell Receptor Repertoire Dynamics Underlie the CD8 + T-Cell Response to HIV-1

Costa, Ana I., Koning, Dan, Ladell, Kristin, McLaren, James E., Grady, Bart P. X., Schellens, Ingrid M. M., van Ham, Petra, Nijhuis, Monique, Borghans, José A. M., Keşmir, Can, Price, David A., van Ba

Journal:

Journal of Virology

Year:

2015

Language:

english

File:

PDF, 1.63 MB

english, 2015

6

Complementarity of Binding Motifs is a General Property of HLA-A and HLA-B Molecules and Does Not Seem to Effect HLA Haplotype Composition

Rao, Xiangyu, De Boer, Rob J., van Baarle, Debbie, Maiers, Martin, Kesmir, Can

Journal:

Frontiers in Immunology

Year:

2013

Language:

english

File:

PDF, 454 KB

english, 2013

7

Measles Virus Epitope Presentation by HLA: Novel Insights into Epitope Selection, Dominance, and Microvariation

Schellens, Ingrid M., Meiring, Hugo D., Hoof, Ilka, Spijkers, Sanne N., Poelen, Martien C. M., van Gaans-van den Brink, Jacqueline A. M., Costa, Ana I., Vennema, Harry, Keşmir, Can, van Baarle, Debbie

Journal:

Frontiers in Immunology

Year:

2015

Language:

english

File:

PDF, 365 KB

english, 2015

8

HLA class I allele promiscuity revisited

Xiangyu Rao, Ilka Hoof, Ana Isabel C. A. Fontaine Costa, Debbie van Baarle, Can Keşmir

Journal:

Year:

2011

Language:

english

File:

PDF, 641 KB

english, 2011

9

A Mathematical Model of Protein Degradation by the Proteasome

Luciani, Fabio, Keşmir, Can, Mishto, Michele, Or-Guil, Michal, de Boer, Rob J.

Journal:

Biophysical Journal

Year:

2005

Language:

english

File:

PDF, 193 KB

english, 2005

10

Heterozygote advantage fails to explain the high degree of polymorphism of the MHC

Rob J. Boer, José A. M. Borghans, Michiel Boven, Can Keşmir, Franz J. Weissing

Journal:

Year:

2004

Language:

english

File:

PDF, 237 KB

english, 2004

11

A Universal Approach to Identify Permissible HLA-Mismatches in HSCT: Predicted Indirectly Recognizable HLA Epitopes

Thus, Kirsten A., Furst, Daniel, van Deutekom, Hanneke, Calis, Jorg, Borst, Eric, Kesmir, Can, Kuball, Jurgen, Mytilineos, Joannis, Spierings, Eric

Journal:

Biology of Blood and Marrow Transplantation

Year:

2014

Language:

english

File:

PDF, 249 KB

english, 2014

12

Proteome Sampling by the HLA Class I Antigen Processing Pathway

Hoof, Ilka, van Baarle, Debbie, Hildebrand, William H., Keşmir, Can, Peters, Bjoern

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 375 KB

english, 2012

13

Identification of wheat varieties using matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry and an artificial neural network

Helle Aagaard Bloch, Can Keşmir, Marianne Petersen, Susanne Jacobsen, Ib Søndergaard

Journal:

Rapid Communications in Mass Spectrometry

Year:

1999

Language:

english

File:

PDF, 55 KB

english, 1999

14

Predicted indirectly recognizable HLA epitopes presented by HLA-DR correlate with the de novo development of donor-specific HLA IgG antibodies after kidney transplantation

Otten, Henny G., Calis, Jorg J.A., Keşmir, Can, van Zuilen, Arjan D., Spierings, Eric

Journal:

Human Immunology

Year:

2013

Language:

english

File:

PDF, 601 KB

english, 2013

15

HIV-1 evolution in patients undergoing immunotherapy with Tat, Rev, and Nef expressing dendritic cells followed by treatment interruption

de Goede, Anna L., van Deutekom, Hanneke W.M., Vrancken, Bram, Schutten, Martin, Allard, Sabine D., van Baalen, Carel A., Osterhaus, Albert D.M.E., Thielemans, Kris, Aerts, Joeri L., Keşmir, Can, Leme

Journal:

Year:

2013

Language:

english

File:

PDF, 670 KB

english, 2013

16

Quantifying the Protection of Activating and Inhibiting NK Cell Receptors during Infection with a CMV-Like Virus

Carrillo-Bustamante, Paola, Keşmir, Can, de Boer, Rob J.

Journal:

Frontiers in Immunology

Year:

2014

Language:

english

File:

PDF, 1.37 MB

english, 2014

17

HLA Preferences for Conserved Epitopes: A Potential Mechanism for Hepatitis C Clearance

Rao, Xiangyu, Hoof, Ilka, van Baarle, Debbie, Keşmir, Can, Textor, Johannes

Journal:

Frontiers in Immunology

Year:

2015

Language:

english

File:

PDF, 533 KB

english, 2015

18

MHC class I molecules exploit the low G+C content of pathogen genomes for enhanced presentation

Jorg J. A. Calis, Gabino F. Sanchez-Perez, Can Keşmir

Journal:

European Journal of Immunology

Year:

2010

Language:

english

File:

PDF, 438 KB

english, 2010

19

Loss of HIV-1-derived cytotoxic T lymphocyte epitopes restricted by protective HLA-B alleles during the HIV-1 epidemic

Schellens, Ingrid M.M., Navis, Marjon, van Deutekom, Hanneke W.M., Boeser-Nunnink, Brigitte, Berkhout, Ben, Kootstra, Neeltje, Miedema, Frank, Keşmir, Can, Schuitemaker, Hanneke, van Baarle, Debbie, B

Journal:

Year:

2011

Language:

english

File:

PDF, 398 KB

english, 2011

20

HLA Alleles Associated with Slow Progression to AIDS Truly Prefer to Present HIV-1 p24

Borghans, José A. M., Mølgaard, Anne, de Boer, Rob J., Keşmir, Can, Altfeld, Marcus

Journal:

Year:

2007

Language:

english

File:

PDF, 253 KB

english, 2007

21

Identification of barley and rye varieties using matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry with neural networks

Helle Aagaard Bloch, Marianne Petersen, Maria Maddalena Sperotto, Can Keşmir, Louise Radzikowski, Susanne Jacobsen, Ib Søndergaard

Journal:

Rapid Communications in Mass Spectrometry

Year:

2001

Language:

english

File:

PDF, 166 KB

english, 2001

22

The role of the proteasome in generating cytotoxic T-cell epitopes: insights obtained from improved predictions of proteasomal cleavage

Morten Nielsen, Claus Lundegaard, Ole Lund, Can Keşmir

Journal:

Year:

2005

Language:

english

File:

PDF, 237 KB

english, 2005

23

Role of peptide processing predictions in T cell epitope identification: contribution of different prediction programs

Calis, Jorg J. A., Reinink, Peter, Keller, Christin, Kloetzel, Peter M., Keşmir, Can

Journal:

Year:

2015

Language:

english

File:

PDF, 1.90 MB

english, 2015

24

Estimating the Fitness Cost of Escape from HLA Presentation in HIV-1 Protease and Reverse Transcriptase

Mostowy, Rafal, Kouyos, Roger D., Hoof, Ilka, Hinkley, Trevor, Haddad, Mojgan, Whitcomb, Jeannette M., Petropoulos, Christos J., Keşmir, Can, Bonhoeffer, Sebastian, Peters, Bjoern

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 666 KB

english, 2012

25

Identifying Permissible HLA-Mismatches in Unrelated-Donor Hematopoietic Stem-Cell Transplantation Using Predicted Indirectly Recognizable HLA Epitopes

Thus, Kirsten A., Geneugelijk, Kirsten, van Deutekom, Hanneke, Calis, Jorg, Borst, Eric, Kesmir, Can, Oudshoorn, Machteld, van der Holt, Bronno, Meijer, Ellen, Zeerleder, Sacha, de Groot, Marco R., vo

Journal:

Biology of Blood and Marrow Transplantation

Year:

2017

Language:

english

File:

PDF, 464 KB

english, 2017

26

Immune biomarkers for predicting response to adoptive cell transfer as cancer treatment

van Belzen, Ianthe A. E. M., Kesmir, Can

Journal:

Year:

2018

Language:

english

File:

PDF, 793 KB

english, 2018

27

Degenerate T-cell Recognition of Peptides on MHC Molecules Creates Large Holes in the T-cell Repertoire

Calis, Jorg J. A., de Boer, Rob J., Keşmir, Can, Peters, Bjoern

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 497 KB

english, 2012

28

Revealing factors determining immunodominant responses against dominant epitopes

Ritmahan, Wannisa, Kesmir, Can, Vroomans, Renske M.A.

Journal:

Year:

2019

File:

PDF, 1.53 MB

2019

29

Immunogenetics special issue 2020: nomenclature, databases, and bioinformatics in immunogenetics

Kesmir, Can, Bontrop, Ronald

Journal:

Year:

2019

File:

PDF, 150 KB

2019

30

An unanticipated lack of consensus cytotoxic T lymphocyte epitopes in HIV-1 databases: the contribution of prediction programs

Schellens, Ingrid MM, Keşmir, Can, Miedema, Frank, van Baarle, Debbie, Borghans, José AM

Journal:

Year:

2008

Language:

english

File:

PDF, 130 KB

english, 2008

31

Bioinformatic analysis of functional differences between the immunoproteasome and the constitutive proteasome

Can Kesmir, Vera Noort, RobJ. Boer, Paulien Hogeweg

Journal:

Year:

2003

Language:

english

File:

PDF, 488 KB

english, 2003

32

A spatial model of germinal center reactions: cellular adhesion based sorting of B cells results in efficient affinity maturation

Can Keşmir, Rob J De Boer

Journal:

Journal of Theoretical Biology

Year:

2003

Language:

english

File:

PDF, 476 KB

english, 2003

33

Modelling the Human Immune System by Combining Bioinformatics and Systems Biology Approaches

Nicolas Rapin, Can Kesmir, Sune Frankild, Morten Nielsen, Claus Lundegaard, Søren Brunak, Ole Lund

Journal:

Journal of Biological Physics

Year:

2006

Language:

english

File:

PDF, 441 KB

english, 2006

34

The distribution of CTL epitopes in HIV-1 appears to be random, and similar to that of other proteomes

Boris V Schmid, Can Keşmir, Rob J de Boer

Journal:

BMC Evolutionary Biology

Year:

2009

Language:

english

File:

PDF, 2.02 MB

english, 2009

35

A Coevolutionary Arms Race between Hosts and Viruses Drives Polymorphism and Polygenicity of NK Cell Receptors

Carrillo-Bustamante, Paola, Keşmir, Can, de Boer, Rob J.

Journal:

Molecular Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 504 KB

english, 2015

36

HLA-B molecules target more conserved regions of the HIV-1 proteome

Fontaine Costa, Ana I, Rao, Xiangyu, LeChenadec, Emmanuelle, van Baarle, Debbie, Keşmir, Can

Journal:

Year:

2010

Language:

english

File:

PDF, 296 KB

english, 2010

37

Humans with chimpanzee-like major histocompatibility complex-specificities control HIV-1 infection

Hoof, Ilka, Keşmir, Can, Lund, Ole, Nielsen, Morten

Journal:

Year:

2008

Language:

english

File:

PDF, 115 KB

english, 2008

38

Discriminating self from nonself with short peptides from large proteomes

Nigel J. Burroughs, Rob J. de Boer, Can Keşmir

Journal:

Year:

2004

Language:

english

File:

PDF, 176 KB

english, 2004

39

Zooming into the binding groove of HLA molecules: which positions and which substitutions change peptide binding most?

van Deutekom, Hanneke W. M., Keşmir, Can

Journal:

Year:

2015

Language:

english

File:

PDF, 694 KB

english, 2015

40

Specificity of inhibitory KIRs enables NK cells to detect changes in an altered peptide environment

Carrillo-Bustamante, Paola, de Boer, Rob J., Keşmir, Can

Journal:

Year:

2017

Language:

english

File:

PDF, 822 KB

english, 2017

41

Clonal Exhaustion as a Result of Immune Deviation

Can Keşmir, Rob J De Boer

Journal:

Bulletin of Mathematical Biology

Year:

2003

Language:

english

File:

PDF, 178 KB

english, 2003

42

Variety identification of wheat using mass spectrometry with neural networks and the influence of mass spectra processing prior to neural network analysis

Helle Aagaard Sørensen, Maria Maddalena Sperotto, Marianne Petersen, Can Keşmir, Louise Radzikowski, Susanne Jacobsen, Ib Søndergaard

Journal:

Rapid Communications in Mass Spectrometry

Year:

2002

Language:

english

File:

PDF, 125 KB

english, 2002

43

In vitro expansion of antigen-specific CD8+ T cells distorts the T-cell repertoire

Koning, Dan, Costa, Ana I., Hasrat, Raiza, Grady, Bart P.X., Spijkers, Sanne, Nanlohy, Nening, Keşmir, Can, van Baarle, Debbie

Journal:

Journal of Immunological Methods

Year:

2014

Language:

english

File:

PDF, 297 KB

english, 2014

44

Classification of Potato Varieties Using Isoelectrophoretic Focusing Patterns, Neural Nets, and Statistical Methods

Jensen, Kirsten, Tygesen, Thomas K., Keşmir, Can, Skovgaard, Ib M., Søndergaard, Ib

Journal:

Journal of Agricultural and Food Chemistry

Year:

1997

Language:

english

File:

PDF, 102 KB

english, 1997

45

The Specificity and Polymorphism of the MHC Class I Prevents the Global Adaptation of HIV-1 to the Monomorphic Proteasome and TAP

Schmid, Boris, Keşmir, Can, de Boer, Rob J., Nixon, Douglas F.

Journal:

Year:

2008

Language:

english

File:

PDF, 344 KB

english, 2008

46

Definition of supertypes for HLA molecules using clustering of specificity matrices

Ole Lund, Morten Nielsen, Can Kesmir, AndersGorm Petersen, Claus Lundegaard, Peder Worning, Christina Sylvester-Hvid, Kasper Lamberth, Gustav Røder, Sune Justesen, Søren Buus, Søren Brunak

Journal:

Year:

2004

Language:

english

File:

PDF, 910 KB

english, 2004

47

50-OR

Thus, Kirsten A., Kesmir, Can, Borst, Eric, de Weger, Roel A., Boelens, Jaap Jan, Spierings, Eric

Journal:

Human Immunology

Year:

2013

Language:

english

File:

PDF, 33 KB

english, 2013

48

Can Selective MHC Downregulation Explain the Specificity and Genetic Diversity of NK Cell Receptors?

Carrillo-Bustamante, Paola, Kesmir, Can, de Boer, Rob J.

Journal:

Frontiers in Immunology

Year:

2015

Language:

english

File:

PDF, 458 KB

english, 2015

49

Biomarkers in Cancer Immunotherapy

Schumacher, Ton N., Kesmir, Can, van Buuren, Marit M.

Journal:

Year:

2015

Language:

english

File:

PDF, 632 KB

english, 2015

50

P120 Predicted indirectly recognizable HLA epitopes presented by HLA-DRB1 are related to HLA antibody formation during pregnancy

Geneugelijk, Kirsten, Hoenger, Gideon, Deutekom, Hanneke, Kesmir, Can, Thus, Kirsten, Hoesli, Irene, Schaub, Stefan, Spierings, Eric

Journal:

Human Immunology

Year:

2017

Language:

english

File:

PDF, 28 KB

english, 2017

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